Journey information
Overview: Heraklion to Mykonos flight
Flights from Heraklion to Mykonos depart on average 15 times per day, taking around 1h 31m. Cheap flight tickets for this journey start at £72 if you book in advance.
The earliest flight runs at 00:10, the last at 23:45. The fastest flight covers the 237 km distance in 2h 20m. May is the cheapest month to fly.
Distance 237 km |
Average flight duration 1h 31m |
Cheapest ticket price £72 |
Flights per day 15 |
Fastest flight 2h 20m |
Cheapest month to travel May |
First flight 00:10 |
Last flight 23:45 |
The cheapest and fastest flights from Heraklion to Mykonos
Cheapest price
£190
Average price
£215
Fastest journey
2 h 25 m
Average duration
4 h 7 m
Flights per day
9
Distance
237 km
The best way to find a cheap flight ticket from Heraklion to Mykonos is to book your journey as far in advance as possible and to avoid travelling at rush hour.
The average ticket from Heraklion to Mykonos will cost around £215 if you buy it on the day, but you can find cheap flight tickets today for only £190.
To travel from Heraklion to Mykonos you need to make at least one change.
A3323 · A3374
A3303 · A3370
A3317 · A3374
A3315 · A3374
A3307 · A3374
A3303 · A3370
A3319 · A3374
A3323 · A3374
A3301 · A3370
A3315 · A3374Travel Information
Compare ferry and flight for Heraklion to Mykonos
Omio recommends booking the ferry as it is the most popular option from Heraklion to Mykonos among Omio's users. If you are prioritising price take the flight with prices starting from £72. For those with little time consider booking a flight which can get you there in 1h 31m. In case you are seeking to minimise your carbon footprint the ferry is your best bet as it emits only 0.0 - 0.2kg. The ticket price range depends on the travel mode: a flight costs an average of £72, and a ferry costs an average of £131.
Distance: 237 km
Compare flight with
| Flight | Most popular Ferry |
|---|---|
£126 Average Price Cheapest | £144 Average Price |
4h 31m Average total duration Fastest 1h 31m Onboard + 3h 0m Additional time* | 8h 33m Average total duration 7h 33m Onboard + 1h 0m Additional time* |
0.7 - 1.4kg CO2 emissions | 0.0 - 0.2kg CO2 emissions Lowest |
![]() Most popular airline | ![]() Most popular ferry company |
Direct Options | Direct Options |
Additional time: Average total travel duration to departure point, security checks and transfers.
Live departures
Heraklion to Mykonos flight times
The table below shows live departures for Heraklion to Mykonos flights for tomorrow, Friday 20 March. You can also manually refresh the results below to see updated flight journeys.
| Provider | Departs | Duration | Arrives | Changes | Tickets |
|---|---|---|---|---|---|
A3301 · A3370 | 04:00 Heraklion International Airport | 4h35 | 08:35 Mykonos Island National Airport | 1 change | |
A3303 · A3370 | 06:10 Heraklion International Airport | 2h25 | 08:35 Mykonos Island National Airport | 1 change | |
A3307 · A3374 | 09:35 Heraklion International Airport | 9h40 | 19:15 Mykonos Island National Airport | 1 change | |
A3317 · A3374 | 11:20 Heraklion International Airport | 7h55 | 19:15 Mykonos Island National Airport | 1 change | |
A3315 · A3374 | 13:00 Heraklion International Airport | 6h15 | 19:15 Mykonos Island National Airport | 1 change | |
GQ232 · GQ215 | 14:30 Heraklion International Airport | 18h45 | 09:15 Mykonos Island National Airport | 1 change | |
A3323 · A3374 | 14:45 Heraklion International Airport | 4h30 | 19:15 Mykonos Island National Airport | 1 change | |
A3319 · A3374 | 16:25 Heraklion International Airport | 2h50 | 19:15 Mykonos Island National Airport | 1 change | |
This is the last flight of the day. | |||||
Find all the dates and times for this journey
Compare prices and tickets Heraklion to Mykonos by ferry or flight
Compare ferry and flight prices over the next three weeks. See the best deals at a glance, find the lowest fares, and choose the option that fits your budget.
21 Mar
22 Mar
23 Mar
24 Mar
25 Mar
26 Mar
27 Mar
Why should you book Heraklion to Mykonos flights with Omio?
Why book with Omio vs Aegean Airlines?
- Designed for International Travelers: Omio is in your language including 24/7 customer service and offers multiple payment options, including PayPal, credit cards, and bank transfer, in your preferred currency.
- Compare all your options: Omio allows you to compare Aegean Airlines with all available travel options, which are ferry and flight to ensure you get the best deal for traveling from Heraklion to Mykonos.
Why book with Omio over Edreams, Kayak or Skyscanner?
- Multiple modes of transport: Omio allows you to compare travel options including ferry and flight to find the ideal travel option from Heraklion to Mykonos.
Airlines: Aegean Airlines from Heraklion to MykonosFind the best flights between Heraklion to Mykonos with Omio's travel partners Aegean Airlines from £72. We can find you the best deals, schedules and tickets when comparing and booking the best trip.
Aegean Airlines
FAQs: Heraklion to Mykonos flights
Find answers to the most common questions about traveling from Heraklion to Mykonos by flight. From journey times and ticket prices to direct connections, first and last departures, and even whether the route is scenic, our FAQs cover everything you need to plan your trip. Whether you’re looking for the fastest flight, the cheapest option, or tips for making the most of your visit at Mykonos, this guide helps you travel smarter and with confidence.

popular airports
Important Stations and Airports in Heraklion and Mykonos
- Free Wi-Fi available throughout the airport.
- Shops available, located in the main terminal, including duty-free and souvenir shops.
- Parking available with short-term and long-term options, approximately 2.5€ per hour.
- Available outside the terminal.
- Ramps, toilets.
- Available throughout the airport.
- Lounge available, Skyserv Lounge in the departures area.
- Located in the arrivals area.
- Bus: 1, 78
- Train: NA
- Metro: NA
- Free Wi-Fi available throughout the airport.
- Shops available, located in the terminal, including duty-free and local products.
- Parking available near the terminal, approximately 2.5€ per hour.
- Available outside the terminal.
- Elevators, ramps.
- Available throughout the airport.
- Lounge available, offers snacks and beverages.
- Located in the main terminal.
- Bus: Mykonos Town Bus
- Taxi
More options for your journey from Heraklion to Mykonos
Here are some other resources that might have the information you need


