- Recommended
Archaeological Museum of Mykonos
Compact museum displaying finds from nearby Delos, including sculpture, pottery and grave stelae from the ancient Aegean.
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Journey information
Overview: Heraklion to Mykonos flight
GreeceGreece
Flights from Heraklion to Mykonos depart on average 15 times per day, taking around 1h 21m. Cheap flight tickets for this journey start at £28 if you book in advance.
The earliest flight runs at 00:10, the last at 23:45. The fastest flight covers the 237 km distance in 50m. October is the cheapest month to fly.
Fares are the lowest economy prices found on Omio. Early booking often means lower prices. Prices change daily and are subject to availability. Discount cards, coach trips, and booking fees are not included.
Price information
Distance 237 km |
Average flight duration 1h 21m |
Cheapest ticket price £28 |
Flights per day 15 |
Fastest flight 50m |
First flight 0:10 |
Last flight 23:45 |
Cheapest Month Oct |
Cheapest Day Tue |
High Season Jul - Sept |
Low Season Jan - Mar |
Busiest Day Wed |
Least Busy Day Sat |
Best time to book 2 days |
Fares are the lowest economy prices found on Omio. Early booking often means lower prices. Prices change daily and are subject to availability. Discount cards, coach trips, and booking fees are not included.
Price information
The cheapest and fastest flights from Heraklion to Mykonos
Showing times, prices and bookable tickets for 19 Sept
Cheapest price on 19 Sept
£84
Average ticket price on 19 Sept
£122
Fastest journey on 19 Sept
2 h 15 m
Average journey duration on 19 Sept
2 h 40 m
Flights on 19 Sept
26
Distance
237 km
Cheap tickets
The best way to find a cheap flight ticket from Heraklion to Mykonos is to book your journey as far in advance as possible and to avoid travelling at rush hour.
The average ticket from Heraklion to Mykonos will cost around £122 if you buy it on the day, but you can find cheap flight tickets today for only £84.
Fast flights
To travel from Heraklion to Mykonos you need to make at least one change.
A3321 · A338421:552h35Heraklion International Airport0:30Mykonos Island National Airport£841One-way1 change- A3305 · A33769:304h40Heraklion International Airport14:10Mykonos Island National Airport£1001One-way1 change
- A3307 · A337811:355h30Heraklion International Airport17:05Mykonos Island National Airport£1001One-way1 change
- A3315 · A338015:005h05Heraklion International Airport20:05Mykonos Island National Airport£1001One-way1 change
- A3303 · A33768:106h00Heraklion International Airport14:10Mykonos Island National Airport£1001One-way1 change
- A3301 · A33726:002h15Heraklion International Airport8:15Mykonos Island National Airport£1001One-way1 change
- A3321 · A338421:552h35Heraklion International Airport0:30Mykonos Island National Airport£841One-way1 change
- A3307 · A337611:352h35Heraklion International Airport14:10Mykonos Island National Airport£1321One-way1 change
GQ215 · GQ23418:552h45Heraklion International Airport21:40Mykonos Island National Airport£1401One-way1 change- A3303 · A33748:103h10Heraklion International Airport11:20Mykonos Island National Airport£1001One-way1 change
Travel Information
Compare flight and ferry for Heraklion to Mykonos
Omio recommends booking the ferry as it is the most popular option from Heraklion to Mykonos among Omio's users. If you are prioritising price, take the flight, with an average ticket price of £90 For those with little time, consider booking a flight, which has an average total journey time of 3h 21m. If you are seeking to minimise your carbon footprint, the ferry is your best option, with estimated CO2 emissions of 0.0 - 0.2kg. Average ticket prices depend on the travel mode: a flight costs an average of £90, while a ferry costs an average of £107.
Distance: 237 km
Compare flight with
| Flight | Most popular Ferry |
|---|---|
£90 Average Price Cheapest | £107 Average Price |
3h 21m Average total duration Fastest 1h 21m Onboard + 2h 0m Additional time* | 9h 20m Average total duration 8h 20m Onboard + 1h 0m Additional time* |
0.7 - 1.4kg CO2 emissions | 0.0 - 0.2kg CO2 emissions Lowest |
Most popular airline |  Most popular ferry company |
Direct Options | Direct Options |
Additional time: Average total travel duration to departure point, security checks and transfers.
The cheapest way to travel from Heraklion to Mykonos is a flight with an average price of £90.
This is compared to other travel options from Heraklion to Mykonos:
A flight is £17 less than a ferry for this route with tickets for a ferry from Heraklion to Mykonos costing on average £107.
The fastest way to travel from Heraklion to Mykonos is by flight with an average journey time of 1h 21m.
Other travel options to Mykonos take longer:
Ferry takes on average 8h 20m.
It's helpful to compare your options as there are 2 ways to travel between Heraklion and Mykonos including taking a flight and ferry.
Live departures
Heraklion to Mykonos flight times
The table below shows live departures for Heraklion to Mykonos flights for today, Friday 18 September. You can also manually refresh the results below to see updated flight journeys.
Last updated at
| Provider | Departs | Duration | Arrives | Changes | Tickets |
|---|---|---|---|---|---|
 BA666+ BA2759 | 21:45 Heraklion International Airport | 16h35 | 14:20 Mykonos Island National Airport | 1 change | |
| BA664+BA2759 | 21:45 Heraklion International Airport | 14h30 | 12:15 Mykonos Island National Airport | 1 change | |
| A3321 · A3384 | 21:55 Heraklion International Airport | 2h35 | 0:30 Mykonos Island National Airport | 1 change | |
| GQ234 · GQ217 | 22:25 Heraklion International Airport | 23h15 | 21:40 Mykonos Island National Airport | 1 change | |
| GQ217 · GQ230 | 22:25 Heraklion International Airport | 9h55 | 8:20 Mykonos Island National Airport | 1 change | |
| GQ217 · GQ232 | 22:25 Heraklion International Airport | 15h30 | 13:55 Mykonos Island National Airport | 1 change | |
| GQ217 · GQ234 | 23:00 Heraklion International Airport | 22h40 | 21:40 Mykonos Island National Airport | 1 change | |
| GQ217 · GQ230 | 23:00 Heraklion International Airport | 9h20 | 8:20 Mykonos Island National Airport | 1 change | |
| GQ232 · GQ217 | 23:00 Heraklion International Airport | 14h55 | 13:55 Mykonos Island National Airport | 1 change | |
| Saturday 19 September | |||||
| A3301 · A3374 | 6:00 Heraklion International Airport | 5h20 | 11:20 Mykonos Island National Airport | 1 change | |
| A3301 · A3372 | 6:00 Heraklion International Airport | 2h15 | 8:15 Mykonos Island National Airport | 1 change | |
| A3303 · A3376 | 8:10 Heraklion International Airport | 6h00 | 14:10 Mykonos Island National Airport | 1 change | |
| A3303 · A3374 | 8:10 Heraklion International Airport | 3h10 | 11:20 Mykonos Island National Airport | 1 change | |
| GQ211 · GQ230 | 8:40 Heraklion International Airport | 23h35 | 8:15 Mykonos Island National Airport | 1 change | |
| GQ232 · GQ211 | 8:40 Heraklion International Airport | 5h15 | 13:55 Mykonos Island National Airport | 1 change | |
| GQ211 · GQ234 | 8:40 Heraklion International Airport | 13h00 | 21:40 Mykonos Island National Airport | 1 change | |
| A3305 · A3376 | 9:30 Heraklion International Airport | 4h40 | 14:10 Mykonos Island National Airport | 1 change | |
| A3305 · A3378 | 9:30 Heraklion International Airport | 7h35 | 17:05 Mykonos Island National Airport | 1 change | |
| A3307 · A3378 | 11:35 Heraklion International Airport | 5h30 | 17:05 Mykonos Island National Airport | 1 change | |
| A3307 · A3376 | 11:35 Heraklion International Airport | 2h35 | 14:10 Mykonos Island National Airport | 1 change | |
| GQ213 · GQ230 | 12:20 Heraklion International Airport | 19h55 | 8:15 Mykonos Island National Airport | 1 change | |
| GQ213 · GQ234 | 12:20 Heraklion International Airport | 9h20 | 21:40 Mykonos Island National Airport | 1 change | |
| GQ213 · GQ232 | 12:20 Heraklion International Airport | 25h35 | 13:55 Mykonos Island National Airport | 1 change | |
| A3309 · A3380 | 13:00 Heraklion International Airport | 7h05 | 20:05 Mykonos Island National Airport | 1 change | |
| A3309 · A3378 | 13:00 Heraklion International Airport | 4h05 | 17:05 Mykonos Island National Airport | 1 change | |
| A3315 · A3380 | 15:00 Heraklion International Airport | 5h05 | 20:05 Mykonos Island National Airport | 1 change | |
| A3319 · A3384 | 18:25 Heraklion International Airport | 6h05 | 0:30 Mykonos Island National Airport | 1 change | |
| GQ230 · GQ215 | 18:55 Heraklion International Airport | 13h20 | 8:15 Mykonos Island National Airport | 1 change | |
| GQ215 · GQ234 | 18:55 Heraklion International Airport | 2h45 | 21:40 Mykonos Island National Airport | 1 change | |
| GQ232 · GQ215 | 18:55 Heraklion International Airport | 19h00 | 13:55 Mykonos Island National Airport | 1 change | |
| GQ580 · GQ561 | 19:30 Heraklion International Airport | 18h55 | 14:25 Mykonos Island National Airport | 1 change | |
This is the last flight of the day. | |||||
Find all the dates and times for this journey
Compare prices and tickets Heraklion to Mykonos by flight or ferry
Compare flight and ferry prices over the next three weeks. See the best deals at a glance, find the lowest fares, and choose the option that fits your budget.
Sat
19 Sept
19 Sept
Sun
20 Sept
20 Sept
Mon
21 Sept
21 Sept
Tue
22 Sept
22 Sept
Wed
23 Sept
23 Sept
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24 Sept
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25 Sept
25 Sept
Why should you book Heraklion to Mykonos flights with Omio?
Aegean Airlines operates all flights services from Heraklion to Mykonos.
Omio is an official ticket reseller for all your travel options from Heraklion to Mykonos.
Why book with Omio vs Aegean Airlines?
- Designed for International Travelers: Omio is in your language including 24/7 customer service and offers multiple payment options, including PayPal, credit cards, and bank transfer, in your preferred currency.
- Compare all your options: Omio allows you to compare Aegean Airlines with all available travel options, which are flight and ferry to ensure you get the best deal for traveling from Heraklion to Mykonos.
Why book with Omio over Edreams, Kayak or Skyscanner?
- Multiple modes of transport: Omio allows you to compare travel options including flight and ferry to find the ideal travel option from Heraklion to Mykonos.
Airlines: Aegean Airlines from Heraklion to MykonosFind the best flights between Heraklion to Mykonos with Omio's travel partners Aegean Airlines from £28. We can find you the best deals, schedules and tickets when comparing and booking the best trip.
Aegean Airlines
About
Aegean Airlines is the flag carrier of Greece and a leading airline in Southeastern Europe, connecting travelers to destinations across Europe, the Middle East, and North Africa. Operating from its main hubs in Athens and Thessaloniki, Aegean offers a modern fleet and high-quality service. Passengers can enjoy comfortable seating, complimentary snacks and drinks on most flights, and additional perks in Business Class such as lounge access, premium dining, and extra comfort. With affordable fares and strong regional connectivity, Aegean Airlines is a trusted choice for exploring Greece and beyond.
Luggage & cancellation policy
Average Aegean Airlines Duration
50m
Cheapest Aegean Airlines Price
£28
Luggage included
1 carry-on bag (max 8kg, 56x45x25cm) and 1 personal item (max 40x20x25cm)
Additional luggage
23kg checked baggage, additional fees apply for extra weight
Cancellation Policy
Refundable tickets available with flex fare option, non-refundable tickets can be changed for a fee
Pregnant on board
Pregnant women can travel up to the 36th week without medical certificate, after that requires doctor's approval
Unaccompagned minor
Children aged 5-11 can travel unaccompanied with mandatory assistance service. Ages 12-17 optional assistance
Amenities on board the airplane
Wifi
USB plugs
Accessibility
Assistance available for passengers with reduced mobility, must be requested at least 48h before departure
Pets
Small pets allowed in cabin, max 8kg including carrier. Must be booked in advance
Entertaiment on board
Complete guide to Mykonos
Things to do in Mykonos
Discover the best of Mykonos — top attractions, local food, transport tips, budget advice, and currency essentials. Plan your perfect Mykonos trip today.
- Recommended
Aegean Maritime Museum
Naval heritage museum with ship models, maps and maritime artefacts highlighting Mykonos's long relationship with the sea.
- Recommended
Rarity Gallery
Contemporary gallery space hosting rotating exhibitions in Chora, useful for seeing current Greek and international art.
- Must visit
Little Venice
Seafront quarter with colourful balconies over the water, narrow lanes and classic sunset views near the old harbour.
- Must visit
Chora
The maze-like old town of Mykonos, filled with whitewashed lanes, chapels, shops and photogenic corners for wandering.
- Recommended
Old Port
Main waterfront promenade beside the old harbour, ideal for a stroll, boat views and easy access to central sights.
- Vegetarian
- Gluten-free
Kopanisti
Kopanisti is Mykonos’s spicy, peppery soft cheese, traditionally matured in the island’s dry wind and eaten spread on bread or rusks.
- Vegetarian
- Gluten-free
Xinotyri
Xinotyri is a sour local cheese from Mykonos, traditionally made from cow’s milk and prized for its tangy flavour in salads and pies.
- Vegetarian
Mostra
Mostra is a classic Mykonian meze of barley rusks topped with kopanisti, tomato, olive oil and often capers; simple, local and full of island flavour.
M-Eating
Refined dining venue in Mykonos Town focused on contemporary Greek and seafood dishes with an elegant terrace atmosphere.
Sakis Grill House
Well-known casual spot in Mykonos Town serving souvlaki, gyros and other Greek favourites, convenient for a quick informal meal.
Katerina's Bar
Traditional taverna in Mykonos Town known for Greek classics, grilled meats and a lively, long-running local atmosphere.
Euro (€)
Mykonos is pricier than many Greek islands, with high summer hotel rates, costly beach dining and taxis, while buses and simple eats are more reasonable.
Average meal costs
- Budget
- €8-15 for gyros, bakery food or simple takeaway.
- Mid-range
- €20-40 per person for a restaurant meal.
- Fine dining
- €60+ per person at upscale restaurants.
- Coffee
- €3-5 for coffee or cappuccino.
Tipping culture
Service may be included, but rounding up or leaving 5-10% is appreciated in restaurants. Round up taxi fares. For cafés, leave small change if service was good.
Mykonos Municipal Requests
Get the appOfficial public transport app
Prices
- Single ticket
- €4.00
- Day pass
- None
To the city centre
Mykonos Island National Airport -> Fabrika Bus Station, Mykonos Town
- Distance
- 1.5 km
- Travel time
- 10 min
- Buses are the main public transport on Mykonos. The Municipality transport page lists routes and operator contact details, but I could not verify a current official day pass.
- Mykonos Airport is about 1.2 km south-east of Mykonos Town. Confirm the latest bus fare and whether card payment is accepted before boarding.
FAQs: Heraklion to Mykonos flights
Find answers to the most common questions about traveling from Heraklion to Mykonos by flight. From journey times and ticket prices to direct connections, first and last departures, and even whether the route is scenic, our FAQs cover everything you need to plan your trip. Whether you’re looking for the fastest flight, the cheapest option, or tips for making the most of your visit at Mykonos, this guide helps you travel smarter and with confidence.
Cheap plane tickets from Heraklion to Mykonos can start from as little as £28 when you book in advance. The average flight ticket price for Heraklion to Mykonos is £90; however, prices vary depending on the time of day and class and they tend to be more expensive on the day.
The average journey time by plane from Heraklion to Mykonos is 50m to travel the 237 km long route. Journey times can vary on weekends and holidays, so use our Journey Planner to search for a specific date.
The earliest flight from Heraklion to Mykonos leaves at 0:10. Plan your trip with the Journey Planner from Omio.
The latest flight from Heraklion to Mykonos leaves at 23:45.
There are 15 flights a day from Heraklion to Mykonos which require at least one change with Aegean Airlines. Schedules can vary on holidays or weekends with fewer flights.
When taking a flight from Heraklion to Mykonos, you can count on Aegean Airlines for the best way to get you to Mykonos. You can also check all possible airlines who offer a service between Heraklion and Mykonos and compare the amenities they offer before buying a plane ticket.
Flights from Heraklion to Mykonos generally leave from Heraklion International Airport and arrive in Mykonos Island National Airport .Heraklion International Airport is 1 km away from Heraklion city centre and Mykonos Island National Airport is 2 km from Mykonos city centre.
The cheapest month for a flight from Heraklion to Mykonos is October.
It's helpful to compare your options as there are 2 ways to travel between Heraklion and Mykonos including taking a flight and ferry.
Since both Heraklion and Mykonos are in the Schengen Area, a passport is not required for European Union (EU) or Schengen-associated country citizens. A national ID card is sufficient.
There is no time difference between Heraklion and Mykonos .
For domestic flights we recommend to arrive 1.5 to 2 hours before departure. Please check the website of your departure airport if in doubt. Some airports may offer booking time slots for security checks or offer additional information on when to get there based on time of day.
Most airlines permit carry-on bags that fit within specific dimensions (e.g., 22 x 14 x 9 inches or 56 x 36 x 23 cm), including handles and wheels. Bags must fit in the overhead bin or under the seat in front of you.
Many airlines impose weight limits, commonly ranging between 7 kg (15 lbs) and 12 kg (26 lbs). Typically, passengers are allowed one carry-on bag and one personal item (for example a purse, laptop bag, or backpack). Personal items must fit under the seat in front of you. Budget Airlines (like Ryanair or Wizz Air) have stricter size and weight limits, often requiring fees for larger carry-ons. Full-Service Airlines have more lenient policies, sometimes including more spacious dimensions or higher weight limits depending on your ticket class.
The list of items prohibited on an airplane varies by country and airline, but in general, the following items are not allowed in carry-on or checked baggage: Weapons and self-defence items, sharp objects, flammable materials, explosives, toxic substances, or liquids over 100ml (except for medications and baby essentials). In checked baggage, firearms (without authorization), explosives, large lithium batteries, and hazardous chemicals are prohibited. Electronic cigarettes must be in carry-on bags, while alcohol and dry ice have restrictions. Always check with your airline for specific regulations.
popular airports
Important Stations and Airports in Heraklion and Mykonos
Most Heraklion to Mykonos flights use the Heraklion International Airport to Mykonos Island National Airport airport pair. Use this guide to compare Heraklion and Mykonos airports on this route, check city-centre transport, alongside checking practicalities like airport facilities and services.
Departure airports in Heraklion
Arrival airports in Mykonos
Which Heraklion airport do flights to Mykonos leave from?
Flights from Heraklion to Mykonos depart from Heraklion International Airport. The airport is 1 km from Heraklion city centre at Heraklion International Airport, 71601 Heraklion, Crete, Greece.
Heraklion International Airport (HER)Heraklion International Airport, 71601 Heraklion, Crete, Greece
City-centre transport
Getting to Heraklion International Airport from Heraklion city centre
Heraklion International Airport is 1 km from Heraklion city centre. Public transport options include:
Bus6, 5, 10, 19 · 7m · £0.90 · every ~14 min
10, 15, 31 · 10m · £0.90 · every ~10 min
Shuttle7m · £2
18m
Heraklion International Airport airport facilities and services
Heraklion International Airport has practical services for this route, including Wifi, Shopping, Parking, ATM, Taxis, Accessibility, WC, Lounge and Lost and Found Office.
Wi-Fi and ATMs
Free Wi-Fi available throughout the airport. ATMs are located in the arrivals and departures areas.
Luggage and lost property
Lost and found is available at the station.
Parking, taxis and toilets
Available at Heraklion International Airport: Parking, Taxis, WC.
Accessibility
Accessibility facilities are available at Heraklion International Airport: Ramps, toilets.
Which Mykonos airport do flights from Heraklion arrive at?
Flights from Heraklion to Mykonos arrive at Mykonos Island National Airport. Mykonos Island National Airport is 2 km from Mykonos city centre.
Mykonos Island National Airport (JMK)Mykonos 846 00, Greece
City-centre transport
Getting to Mykonos Island National Airport from Mykonos city centre
Mykonos Island National Airport is 2 km from Mykonos city centre. Public transport options include:
Bus10m · £2 · every ~3 min
Mykonos Island National Airport airport facilities and services
Mykonos Island National Airport has practical services for this route, including Wifi, Shopping, Parking, ATM, Taxis, Accessibility, WC, Lounge and Lost and Found Office.
Wi-Fi and ATMs
Free Wi-Fi available throughout the airport. ATMs are located in the terminal.
Luggage and lost property
Lost and found is available at the station.
Parking, taxis and toilets
Available at Mykonos Island National Airport: Parking, Taxis, WC.
Accessibility
Accessibility facilities are available at Mykonos Island National Airport: Elevators, ramps.
More options for your journey from Heraklion to Mykonos
Here are some other resources that might have the information you need
Most popular flights to and from Mykonos and Heraklion
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